Publications

neo4jsbml: import systems biology markup language data into the graph database Neo4j

(Gricourt, 2024)

PeerJ

Baseline circulating tumour DNA and total metabolic tumour volume as early outcome predictors in aggressive large B-cell lymphoma. A real-world 112-patient cohort

(Le Goff, 2023)

British Journal of Haematology

Case Report: Cerebral Nocardiosis Caused by Nocardia cyriacigeorgica Detected by Metagenomics in an Apparently Immunocompetent Patient

(Courbin, 2022)

Frontiers in Immunology

Fusion Gene Detection and Quantification by Asymmetric Capture Sequencing (aCAP-Seq)

(Gricourt, 2022)

The Journal of Molecular Diagnostics

Prospective Comparison Between Shotgun Metagenomics and Sanger Sequencing of the 16S rRNA Gene for the Etiological Diagnosis of Infections

(Lamoureux, 2022)

Frontiers in Microbiology

Analysis of microbiota and mycobiota in fungal ball rhinosinusitis: Specific interaction between aspergillus fumigatus and haemophilus influenza?

(Delliere, 2021)

Journal of Fungi

Macrophage autophagy protects against hepatocellular carcinogenesis in mice

(Deust, 2021)

Scientific Reports

Novel SARS-CoV-2 Variant Derived from Clade 19B, France

(Fourati, 2021)

Emerging infectious diseases

16S metagenomic assessment of the skin microbiota dynamic and possible association with the risk of infection in patients with epidermal necrolysis

(Lavaud, 2021)

Journal of the European Academy of Dermatology and Venereology

Toward a better understanding of adult idiopathic epidermal necrolysis. A retrospective study of 19 cases

(Monnet, 2021)

Journal of the European Academy of Dermatology and Venereology

Assessment of Bacterial Colonization of Intracranial Pressure Transducers: A Prospective Study

(Mounier, 2021)

Neurocritical Care

Genomic, Metagenomic and Transcriptomic Characterization of the Clinical Forms of COVID-19: A Comparative Cross-Sectional Study

(Rodriguez, 2021)

Plos Pathogens

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

(De Vries, 2021)

Journal of Clinical Virology

Fatal encephalitis caused by Newcastle disease virus in a child

(Winter, 2021)

Acta neuropathologica

Fitness-associated substitutions following failure of direct-acting antivirals assessed by deep sequencing of full-length hepatitis C virus genomes

(Fourati, 2020)

Alimentary pharmacology & therapeutics

Impact and consequences of intensive chemotherapy on intestinal barrier and microbiota in acute myeloid leukemia: the role of mucosal strengthening

(Hueso, 2020)

Gut Microbes

Fatal Encephalitis Caused by Cristoli Virus, an Emerging Orthobunyavirus, France

(Rodriguez, 2020)

Emerging Infectious Diseases

Fatal Measles Inclusion-Body Encephalitis in Adult with Untreated AIDS, France

(Rodriguez, 2020)

Emerging Infectious Diseases

Pathogen identification by shotgun metagenomics of patients with necrotising soft‐tissue infections

(Rodriguez, 2019)

British Journal of Dermatology